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uqsa

uqsa.Rmd

UQSA is an R-package for modelling and calibration of biochemical reaction networks.

  1. In order to use this package you need to install the R language (or R-studio).
  2. Once R is available, you can install the UQSA package foolowing the installation instructions.
  3. After installation, to test that everything is working and to get to know UQSA run the introductory example: AKAR4
  4. It could be useful to read about the model and data format that we use in our examples, SBtab, and our short intro to SBtab.
  5. Look into more examples.

For very large examples you need to be able to run the sampling problem (ABC, MCMC) on a cluster (High Performance Computing).