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Examples Overview

examples_overview.Rmd

Example Models

A simple example using the AKAR4 model is available in the article AKAR4. You can run it locally using

library(uqsa)
source(uqsa_example("AKAR4",pat="^runABCMCMC_AKAR4[.]R$"))

A few larger (computationally expensive) examples: AKAP79, CaMKII, and the stochastic version of AKAR4 are available in the form of R scripts and can be run locally or (preferably) on a computer cluster. These are the examples that are included in the package

For the ODE models we added measurement noise or used an acceptance probability in order to allow the use of ABC (Alahmadi et al 2020). The demo R scrips can be found in the folder inst/extdata.

The ?uqsa::uqsa_example function can locate the example folders after package installation.