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Examples overview

examples_overview.Rmd

Example Models

A simple example using the AKAR4 model is available in the article AKAR4. You can run it locally using

library(uqsa)
source(uqsa_example("AKAR4",pat="^runABCMCMC_AKAR4[.]R$"))

A few larger (computationally expensive) examples: AKAP79, CaMKII, and the stochastic version of AKAR4 are available in the form of R scripts and can be run locally or (preferably) on a computer cluster. These are the examples that are included in the package

For the ODE models we added measurement noise or used a acceptance probability in order to allow the use of ABC (Alahmadi et al 2020). The demo R scrips can be found in the folder inst/extdata.

The uqsa::uqsa_example function can locate the example folders after package installation.