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Interpret a model as an ODE

as_ode.Rd

This function accepts a list generated from a collection of TSV files (or a similar format) and interprets the contents as an ordinary differential equation (ODE).

Usage

as_ode(m, cla = requireNamespace("pracma"))

Arguments

m

a list of data.frames, each corresponding to a TSV file or sheet in a spreadsheet.

cla

a Boolean value indicating whether conservation law analysis should be performed.

Value

a list that contains a summary of this model interpreted as an ODE, crucially, the list contains the element vf, the right-hand-side (vector field) of the ODE, this is the main result of this function.

Details

The argument m can be obtained via model_from_tsv(). It has the components:

  • m$Constant

  • m$Parameter

  • m$Input

  • m$Expression

  • m$Compound

  • m$Reaction

  • m$Experiment

There can be additional components describing measured data for this model.